Describe reproducibly how to integrate measurments of sarcomere, YAP1 intensity, and cardiomyocyte area

How it was actually done before

I have a table where I somehow connected the measurments from cell area supplied by Katka and the sarcomere measurments clear

Outline

1. Set up pipeline
2. Run cells through pipeline
3. Quality check
4. Post process first part
5. Tweak pipeline for the non-recognized cells
6. Re-run cells through pipeline
7. Quality check
8. Post process second part
9. Measure sarcomere length
10. Process the treatmen_image-number_measurement-number
11. Integrate with cell profiler measurements
12. Set positivity treshold
13. Split/label cells to positive/negative
14. How to integrate multiple measurments of sarcomere length with a single value of cell area/yap1 intensity?

The most important question: How did I do it previously?